PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g26823.1.p
Common NameBRADI_2g26823, LOC100841519
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SRS
Protein Properties Length: 250aa    MW: 26108.8 Da    PI: 8.4276
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g26823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021922.1e-5961702152
            DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaa.krrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 
                       +sg+asC+dCGnqakkdC ++RCRtCCks+gfdC+thv+stW+paa +rr+rq+ +     ++a+  + ++sk+ r+l  + q+++++++++s
  Bradi2g26823.1.p   6 GSGGASCNDCGNQAKKDCPYQRCRTCCKSQGFDCTTHVRSTWIPAAsRRRDRQNPAGPNGDDSASGLSPSSSKKARRLL-SCQTTTTNSRTQS 97 
                       57899***************************************97255666666666666777777888888888763.3344444444444 PP

            DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvdd.....geeelaYqtavsigGhvfkGiLydqGl 152
                       ++s+ +++++s          lP+ v+++avfrcvrv+ vdd     g +elaYq++v+i+Gh+f+G+LydqG 
  Bradi2g26823.1.p  98 TSSR-SFDATStqqeapfrdsLPRYVRAPAVFRCVRVTPVDDgggggGVDELAYQASVTINGHMFRGFLYDQGR 170
                       4333.2222222458899999*********************54433369**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-539170IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.9E-261153IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.3E-21118169IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASVGGSGGA SCNDCGNQAK KDCPYQRCRT CCKSQGFDCT THVRSTWIPA ASRRRDRQNP  60
AGPNGDDSAS GLSPSSSKKA RRLLSCQTTT TNSRTQSTSS RSFDATSTQQ EAPFRDSLPR  120
YVRAPAVFRC VRVTPVDDGG GGGGVDELAY QASVTINGHM FRGFLYDQGR GNVSVDESSS  180
HAAAVRSISD LHLGTAVSAS SAVPPGVYDA VGSAQLILGG LSYAEKREPV CNACGDTNSH  240
ASLKIICWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g26823.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753858.20.0uncharacterized protein LOC100841519
TrEMBLA0A0Q3MQG30.0A0A0Q3MQG3_BRADI; Uncharacterized protein
STRINGMLOC_59277.53e-76(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-37Lateral root primordium (LRP) protein-related