PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g29010.1.p
Common NameBRADI_2g29010, LOC100842546
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 230aa    MW: 24738.4 Da    PI: 9.4379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g29010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-203180255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+WvAeIr+p++   r r +lg+f taeeAa+a+++a+++l+g
  Bradi2g29010.1.p 31 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFSTAEEAARAYDRAALQLYG 80
                      59****999.**********954...5************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-143180IPR001471AP2/ERF domain
PROSITE profilePS5103223.1693188IPR001471AP2/ERF domain
SMARTSM003805.5E-373194IPR001471AP2/ERF domain
CDDcd000182.04E-293186No hitNo description
Gene3DG3DSA:3.30.730.102.5E-303187IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-213187IPR016177DNA-binding domain
PRINTSPR003676.7E-113243IPR001471AP2/ERF domain
PRINTSPR003676.7E-115470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEKPNPLTTT EAASSSGGRK AKGGPENSKF RYRGVRQRSW GKWVAEIREP RKRSRKWLGT  60
FSTAEEAARA YDRAALQLYG PRAQLNLTSP PPLAGPGAHS HPSASASSST SSSSAPPTLR  120
PLLPRPQPQY SHHQHYYRFL PLHGLPTTSA PPPLYYASTV TASTVAHQAT LTPAVASSST  180
AGDAQDGAAP AEAAQAEATG WEYMAREEDD YEAALLWNEP DTLLDIFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-173287662ATERF1
3gcc_A5e-173287662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g29010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9412367e-68EU941236.1 Zea mays clone 1419729 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568646.11e-164ethylene-responsive transcription factor ABI4
TrEMBLA0A0Q3G6001e-162A0A0Q3G600_BRADI; Uncharacterized protein
STRINGGRMZM2G093595_P012e-50(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-25ERF family protein