PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g29960.1.p
Common NameBRADI_2g29960, LOC100845690
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 382aa    MW: 41650.5 Da    PI: 4.7323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g29960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18130180155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  Bradi2g29960.1.p 130 CKFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAETAACAYDEAARAMYG 180
                       79*****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-12130180IPR001471AP2/ERF domain
CDDcd000184.64E-29130190No hitNo description
SuperFamilySSF541715.95E-20131189IPR016177DNA-binding domain
PROSITE profilePS5103221.232131188IPR001471AP2/ERF domain
SMARTSM003806.2E-36131194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-30131188IPR001471AP2/ERF domain
PRINTSPR003672.5E-9132143IPR001471AP2/ERF domain
PRINTSPR003672.5E-9154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTVDQRSVAA APLEIPALQP GRTLGAEANT RSHVSVESIG SCTLPCNECE LSAQQTPKGV  60
APVASILRKK RPRRSRDGPN SVSETIRRWK EVNQQLEHDP EGAKRARKPP AKGSKKGCMQ  120
GKGGPENTRC KFRGVRQRTW GKWVAEIREP NRVSRLWLGT FPTAETAACA YDEAARAMYG  180
PLARTNFTIQ DVPTPAVDIP AVVQRLLPGG STSCESTMTS NHSGIVASSR VLEISSSLKQ  240
SDVGSEHDQR SNQYSSPQAG SSVARSRADD LFEPLEPIAN LPDGEDDGFD IEELLRMMEA  300
DPVEAAEPMV ENSWTGFQDV GANTVVDFDQ QEPSYLDDFN PSMLEGMLQL AEPFPTCISE  360
DRVMFNPGLR DADLSEFFEG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-14132190362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g29960.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568656.10.0dehydration-responsive element-binding protein 2B isoform X1
SwissprotQ5W6R41e-81DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLI1HKG20.0I1HKG2_BRADI; Uncharacterized protein
STRINGBRADI2G29960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-37ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]