PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g30530.1.p
Common NameBRADI_2g30530, LOC100832754
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 19617.5 Da    PI: 10.1663
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g30530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.49e-191663249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      rienk  r vtfskR+ g+ KK +E+ vLC +++a++ +s+ gk++ +
  Bradi2g30530.1.p 16 RIENKESRLVTFSKRKSGLWKKGSEIAVLCRVRIALLAISEAGKVFAF 63
                      9********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-19766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.89767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-21872IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-17929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGEKKTAGKR SIRIQRIENK ESRLVTFSKR KSGLWKKGSE IAVLCRVRIA LLAISEAGKV  60
FAFGSPSVDA VLGGDAGAVP ADDGAGWEAV EALYRETEGK VREVAAESAR MDAVGEKVRQ  120
AQAQAGKRFW FEVDVEALGA EELPVFAMAL QRLRENVGRR IEFCLHSAAA AKVGQNRAPF  180
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g30530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693420.0KF469342.1 Brachypodium distachyon MADS-box transcription factor 48 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288328.11e-126agamous-like MADS-box protein AGL62-like
TrEMBLA0A2K2DB891e-125A0A2K2DB89_BRADI; Uncharacterized protein
TrEMBLI1HKJ11e-125I1HKJ1_BRADI; MADS-box transcription factor 48
STRINGBRADI2G30530.11e-125(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-18AGAMOUS-like 64
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]