PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g31276.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 169aa MW: 18758.5 Da PI: 10.1001

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g31276.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50	5.2e-16	61	103	14	56
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +L +lF++++++++++ +eL+++l+L+ rqVk+WFqNrR+++k Bradi2g31276.1.p 61 ALCRLFKECPHLDEKQHAELSRRLSLDARQVKFWFQNRRTQMK 103 7889************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	6.7E-6	47	109	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-13	56	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-15	61	112	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-13	61	103	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.021	62	105	IPR001356	Homeobox domain
CDD	cd00086	1.20E-9	64	105	No hit	No description
PROSITE pattern	PS00027	0	80	103	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MTAGRGATTW TPSPASETTT TPSPATPASG RSVKAPLIAR ARILLSLRLF SLVISCMDSS 60 ALCRLFKECP HLDEKQHAEL SRRLSLDARQ VKFWFQNRRT QMKTQLERHE NTLLKQENDK 120 LCGSTYALRT HGSRMNSTES VPLPPSSLAN LYPSCHRSSC SHTCQCRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g31276.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF857484	8e-67	KF857484.1 Avena strigosa cultivar S75 homeobox-leucine zipper protein (HDZ1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K2DBB0	1e-119	A0A2K2DBB0_BRADI; Uncharacterized protein
STRING	BRADI3G23370.1	2e-38	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	5e-28	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g31276.1.p