PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g31710.3.p

Common Name

BRADI_2g31710, LOC100824282

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 652aa MW: 72655.2 Da PI: 7.9062

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g31710.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.6	3.8e-26	549	600	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle++++yFs+++k+AAk+Lgvc+T++KriCR++GI+ WP+R i+++ Bradi2g31710.3.p 549 AEKTISLEVIQQYFSGSLKSAAKSLGVCPTTMKRICRKHGIPHWPSREISKV 600 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.017	539	620	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-23	552	600	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MDLDSSDGEA WLLDALATPP LFSAAAPLPW LCGDQHYSSL PMDAVSDLDE TPGTRSGESE 60 TAAKKVENMN GKMQVPVSLD DDYSDCSHFM KERLALALSY FKESTDQHLL VQVWIPTKNG 120 DRYVLTTSGH PFLLAQESIK LVQYRAVSMT YAFSVDGENV HDLGLPGRVY KQRVPEWTPS 180 VQYYSSFEYP RLNHAINHNV HGTVALPVFD PSMKSCIGVV ELIMTSKKVN YASEVDKVCK 240 ALEAVNLKST KIVEHPCVQI CNESRQVALV EILEILTVVC EEFKLPLGQT WVPCKYQSLL 300 AHGGVKRSCL SFGGSCMEEV CISTSDVAFH IIDARMWGFR DACVAHHLQK GQGVSGKAFI 360 SGRPCFSKDV SRFSKMEYPL VHYARMFALA GCFSIYLQSA YTGDDYILEF FLPPDCREDD 420 EQKALLQSII VLLRQHLRTL QVAGDKGLNE ACLQVDAVTV MHNEETGNTY VQDLNVGGGI 480 HTLLESDMHG GIHESDNRNH KASTMSKNHL LSHDYSGDKP VAIPSGSGTS DSSLLYKNKK 540 NPVRRRGKAE KTISLEVIQQ YFSGSLKSAA KSLGVCPTTM KRICRKHGIP HWPSREISKV 600 NKSISKLKEI NQGKRKLLRF TFLLVMNTKL HPRRSHYKIV AQAYSFPHKP F*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MDLDSSDGEA WLLDALATPP LFSAAAPLPW LCGDQHYSSL PMDAVSDLDE TPGTRSGESE  60
TAAKKVENMN GKMQVPVSLD DDYSDCSHFM KERLALALSY FKESTDQHLL VQVWIPTKNG  120
DRYVLTTSGH PFLLAQESIK LVQYRAVSMT YAFSVDGENV HDLGLPGRVY KQRVPEWTPS  180
VQYYSSFEYP RLNHAINHNV HGTVALPVFD PSMKSCIGVV ELIMTSKKVN YASEVDKVCK  240
ALEAVNLKST KIVEHPCVQI CNESRQVALV EILEILTVVC EEFKLPLGQT WVPCKYQSLL  300
AHGGVKRSCL SFGGSCMEEV CISTSDVAFH IIDARMWGFR DACVAHHLQK GQGVSGKAFI  360
SGRPCFSKDV SRFSKMEYPL VHYARMFALA GCFSIYLQSA YTGDDYILEF FLPPDCREDD  420
EQKALLQSII VLLRQHLRTL QVAGDKGLNE ACLQVDAVTV MHNEETGNTY VQDLNVGGGI  480
HTLLESDMHG GIHESDNRNH KASTMSKNHL LSHDYSGDKP VAIPSGSGTS DSSLLYKNKK  540
NPVRRRGKAE KTISLEVIQQ YFSGSLKSAA KSLGVCPTTM KRICRKHGIP HWPSREISKV  600
NKSISKLKEI NQGKRKLLRF TFLLVMNTKL HPRRSHYKIV AQAYSFPHKP F*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g31710.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753898.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2K2DBC6	0.0	A0A2K2DBC6_BRADI; Uncharacterized protein
STRING	Pavir.Ca00444.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bradi2g31710.3.p
Entrez Gene	100824282