PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g32910.4.p
Common NameBRADI_2g32910, LOC100824190
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 313aa    MW: 35843.2 Da    PI: 9.2199
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g32910.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-3189139151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Bradi2g32910.4.p  89 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 139
                       79***********************************************95 PP
2K-box102.36.2e-341572534100
             K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       s++   ++e +a+++qqe+akL+ +i nLq+++R l+Ge++ ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n +Lr
  Bradi2g32910.4.p 157 SNT-GtVAEINAQHYQQESAKLRHQITNLQNSNRTLIGESMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNDNLYLR 248
                       333.349999*********************************************************************************** PP

             K-box  96 kklee 100
                       +k++e
  Bradi2g32910.4.p 249 SKVAE 253
                       **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF086396.4E-65213IPR013948DNA replication regulator Sld3
PROSITE profilePS5006633.8881141IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-4281140IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-3282154IPR002100Transcription factor, MADS-box
CDDcd002657.44E-4482155No hitNo description
PRINTSPR004042.1E-3283103IPR002100Transcription factor, MADS-box
PROSITE patternPS00350083137IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2690137IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-32103118IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-32118139IPR002100Transcription factor, MADS-box
PfamPF014862.0E-25166251IPR002487Transcription factor, K-box
PROSITE profilePS5129714.531167257IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALLLGGEIA RFPARGRDSA RDIYSLRKPQ KERHHTREEM EHSLTFSSHL QRIVQEVAAQ  60
EQPESDSPGS GSGSAGASEK MGRGRIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  120
AEVALIVFSS RGRLYEYSNN SVKATIERYK KATSDTSNTG TVAEINAQHY QQESAKLRHQ  180
ITNLQNSNRT LIGESMATMS HRDLKQLEGR LDKGLGKIRA RKNELLCAEI EYMQRREMEL  240
QNDNLYLRSK VAENERGQQQ TLNMMGAAST SDQYEQNMIH CDPRNFLQFN IMQQPQYYQQ  300
QEDRKAYDSV ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-2081149169Myocyte-specific enhancer factor 2B
1tqe_Q7e-2081149169Myocyte-specific enhancer factor 2B
1tqe_R7e-2081149169Myocyte-specific enhancer factor 2B
1tqe_S7e-2081149169Myocyte-specific enhancer factor 2B
6c9l_A7e-2081149169Myocyte-specific enhancer factor 2B
6c9l_B7e-2081149169Myocyte-specific enhancer factor 2B
6c9l_C7e-2081149169Myocyte-specific enhancer factor 2B
6c9l_D7e-2081149169Myocyte-specific enhancer factor 2B
6c9l_E7e-2081149169Myocyte-specific enhancer factor 2B
6c9l_F7e-2081149169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g32910.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693130.0KF469313.1 Brachypodium distachyon MADS-box transcription factor 18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230317.10.0MADS-box transcription factor 58-like isoform X3
SwissprotQ2V0P11e-142MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A2K2DBJ20.0A0A2K2DBJ2_BRADI; Uncharacterized protein
STRINGBRADI2G32910.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  7. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  8. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  9. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  10. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]