PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g33307.2.p
Common NameBRADI_2g33307, LOC100844870
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 263aa    MW: 29410.2 Da    PI: 8.3769
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g33307.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.7e-34431891128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                       lp+G++F+Ptd+el+ e+L+ kv +        +   +    +i+   +i++++P++Lp  v+ + ++ +fF++++k+y+tg+rk+r+     
  Bradi2g33307.2.p  43 LPVGVKFDPTDQELI-EHLETKVMDGGsrahplI---DdfipTIQGEdGICYTHPEKLP-GVTRNGQSKHFFHRSSKAYTTGTRKRRKiqaes 130
                       799************.99****999885665442...133334666646**********.555667899******************878999 PP

               NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               ++ +W++tgk++++++ +g+++ +kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Bradi2g33307.2.p 131 dqpnsknCAETRWHKTGKTRALMV-DGRQKACKKILVLYtsFGKHRKPEKTNWVMHQYNL 189
                       999888766899************.999***********5547999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3536208IPR003441NAC domain
PROSITE profilePS5100530.84943208IPR003441NAC domain
PfamPF023651.7E-1544189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDRDHPRYSM NDAKLQEHRI SVSRRCPSCG HELDCMPKDM MGLPVGVKFD PTDQELIEHL  60
ETKVMDGGSR AHPLIDDFIP TIQGEDGICY THPEKLPGVT RNGQSKHFFH RSSKAYTTGT  120
RKRRKIQAES DQPNSKNCAE TRWHKTGKTR ALMVDGRQKA CKKILVLYTS FGKHRKPEKT  180
NWVMHQYNLG GLDDEKEGEL IVSKVFYQTQ TRHGVAGTAA TLDERARDGN MEEETAGSTQ  240
IGIIGAYALA AAAAATVEEQ RQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g33307.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754986.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_024315135.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_024315136.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F81e-107NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0Q3K8E90.0A0A0Q3K8E9_BRADI; Uncharacterized protein
STRINGBRADI2G33307.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-108NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]