PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g33540.1.p
Common NameBRADI_2g33540, LOC100835222
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 166aa    MW: 18574.7 Da    PI: 9.0254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g33540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-3095152259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYG+K vk+s++pr+YYrC+ ++C vkk+ver+++dp++v++tY g Hnh 
  Bradi2g33540.1.p  95 EDGFKWRKYGKKAVKNSPNPRNYYRCSAERCGVKKRVERDRDDPRFVVTTYDGVHNHA 152
                       8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3087154IPR003657WRKY domain
PROSITE profilePS5081129.83889154IPR003657WRKY domain
SuperFamilySSF1182901.7E-2690154IPR003657WRKY domain
SMARTSM007741.3E-3394153IPR003657WRKY domain
PfamPF031068.2E-2495151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAASLGLIPE ADLFSSAYAH GDFTSPLQEY YQHRYPSDLE YSATPPVFLP GAGDHHGGEE  60
EEEKKTRANS KKKARAIGGG RIGFRTRSEE VEILEDGFKW RKYGKKAVKN SPNPRNYYRC  120
SAERCGVKKR VERDRDDPRF VVTTYDGVHN HATPVSAAAA LRFYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2480154477Probable WRKY transcription factor 4
2lex_A2e-2480154477Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g33540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571963e-72AK357196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048A03.
GenBankDQ8404163e-72DQ840416.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 17 (WRKY17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231637.11e-121probable WRKY transcription factor 50
TrEMBLI1HL631e-119I1HL63_BRADI; Uncharacterized protein
STRINGBRADI2G33540.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-36WRKY DNA-binding protein 50