PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g33650.1.p
Common NameBRADI_2g33650
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 199aa    MW: 22450.2 Da    PI: 4.627
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g33650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.82.7e-1988141153
           G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                       kpr+rWt eLH++Fvea+++LG G+++ +P++i  +m+v+ ++++ + SH+Q +
  Bradi2g33650.1.p  88 KPRVRWTRELHDKFVEAINRLGtGTDQVVPRRIFSMMDVDYISRKSIGSHMQNF 141
                       79*******************999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1786141IPR009057Homeodomain-like
SuperFamilySSF466896.99E-1286142IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-1788141IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAFSLLECCV TVTSVRPLSA LLLIFPKLVS AYDDTVTHVL RKNETKNHKS SGNTDADQRV  60
QAGIAEAEQG ACKEHQEELK EEENSTKKPR VRWTRELHDK FVEAINRLGT GTDQVVPRRI  120
FSMMDVDYIS RKSIGSHMQN FIEDDAFLKN SIEDDVLLKN FIEDDDLLKS FLEDDDLLKN  180
SIGDDDLLNA SSKQFVSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g33650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.11e-21two-component response regulator ORR24
TrEMBLI1HL761e-143I1HL76_BRADI; Uncharacterized protein
STRINGBRADI2G33650.11e-144(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.17e-14response regulator 10