PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g34520.1.p
Common NameBRADI_2g34520
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 257aa    MW: 26763.1 Da    PI: 8.7472
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g34520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.3e-39601601101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+++p f   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+a+
  Bradi2g34520.1.p  60 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVHALEAD 152
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la+l++++
  Bradi2g34520.1.p 153 LAALRAQI 160
                       **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.84959160IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-3960157IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPIASDWQEH ELGKKIKRES AAAAEADRMM AARRSSSSQL PAAAAAGAGP GSAPFNTMTP  60
CAACKLLRRR CAQECPFSPF FSPLEPHKFA SVHKVFGASN VSKMLLEVHE SQRGDAANSL  120
VYEANLRLRD PVYGCMGAIL TLQQQVHALE ADLAALRAQI QLHHHKQQQH TQSSLRPPPP  180
ATAGNNVPSN VLPSSHASQL LAAAAAASTA GPARAAQAAA AMGPAASASS STTVYAAASS  240
STDYSSITHE NVPYFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-376016011111LOB family transfactor Ramosa2.1
5ly0_B1e-376016011111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g34520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958311e-108FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566503.20.0LOB domain-containing protein 15
SwissprotQ9AT611e-62LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A0Q3G9Z60.0A0A0Q3G9Z6_BRADI; Uncharacterized protein
STRINGBRADI2G34520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-58LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]