PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g34520.2.p

Common Name

LOC100835831

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 256aa MW: 26732.1 Da PI: 8.7487

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g34520.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.3e-39	59	159	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++p f +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+a+ Bradi2g34520.2.p 59 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVHALEAD 151 7****************************************************************************************** PP DUF260 94 lallkeel 101 la+l++++ Bradi2g34520.2.p 152 LAALRAQI 159 999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.849	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-39	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MLHSDWQEHE LGKKIKRESA AAAEADRMMA ARRSSSSQLP AAAAAGAGPG SAPFNTMTPC 60 AACKLLRRRC AQECPFSPFF SPLEPHKFAS VHKVFGASNV SKMLLEVHES QRGDAANSLV 120 YEANLRLRDP VYGCMGAILT LQQQVHALEA DLAALRAQIQ LHHHKQQQHT QSSLRPPPPA 180 TAGNNVPSNV LPSSHASQLL AAAAAASTAG PARAAQAAAA MGPAASASSS TTVYAAASSS 240 TDYSSITHEN VPYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	59	159	11	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	59	159	11	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g34520.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-108	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566503.2	0.0	LOB domain-containing protein 15
Swissprot	Q9AT61	1e-62	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	I1HLF5	0.0	I1HLF5_BRADI; Uncharacterized protein
STRING	BRADI2G34520.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	6e-58	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Bradi2g34520.2.p
Entrez Gene	100835831

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]