PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g34600.1.p

Common Name

BRADI_2g34600, LOC100837065

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 232aa MW: 24660.2 Da PI: 10.3064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g34600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.3e-11	41	86	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++P a ++Ka+ L +v+ +k+L Bradi2g34600.1.p 41 VHSEAERRRRERINAHLATLRRMIPDA-----SQMDKASLLASVVNQVKDL 86 59************************9.....6899999999999888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.716	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	41	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-9	41	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-12	41	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-10	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.7E-5	127	178	No hit	No description
SuperFamily	SSF55021	1.14E-5	127	184	No hit	No description
CDD	cd04873	1.98E-6	131	200	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGGGVIRDRL MATTCQPPTA APEVSSSSGR SSTEMRRSLK VHSEAERRRR ERINAHLATL 60 RRMIPDASQM DKASLLASVV NQVKDLKRKT TARTTTQAAA AAPIPPEANE VTVRCCCAST 120 GGDRATYVRA TVSCEDGPGL LAGLAGAFRG LGLRALRAEV ASLGGRAHHE FLLRKEEEDG 180 DLGAGVRLME AAVRQALAEV AFPEMARGGS GGSWSKRQRL LEARCSVMYS V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	50	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g34600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110619	5e-38	AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566506.1	1e-166	transcription factor bHLH30
TrEMBL	I1HLG4	1e-164	I1HLG4_BRADI; Uncharacterized protein
STRING	BRADI2G34600.1	1e-165	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-16	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi2g34600.1.p
Entrez Gene	100837065