PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g36778.1.p
Common NameBRADI_2g36778
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 257aa    MW: 28455.4 Da    PI: 4.5583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g36778.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.94.1e-111048240
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                       ien+ +r++t+ +R++ ++ K +ELS+LC + ++++++
  Bradi2g36778.1.p 10 YIENNARRKTTLKRRLKCLISKVNELSILCHVVALLVVY 48
                      59*******************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.759150IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-15177IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-8162IPR002100Transcription factor, MADS-box
CDDcd002666.21E-15283No hitNo description
PRINTSPR004043.6E-5323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-101149IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MARGKVKLQY IENNARRKTT LKRRLKCLIS KVNELSILCH VVALLVVYRN ADVQQPEVVW  60
PSMEQAVAVA EEYMAVNTEK LKKDLDGLGL TQELVAKERA KVQNLQQTIQ TKQIIHNLFI  120
RRQTLNAQGL TLTPEVDHEL RSLNLQVTTD IQCQLQSTLR AVNDQLKEKR SGSTSAPPAA  180
ELEAPVAPDD VPAVAPMEMD PSHAADAPMA AGLGGFFIDE EDDFTFDEED DFDIDGDGSD  240
LLTPEQLRDI LARIGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g36778.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233355.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3MTE80.0A0A0Q3MTE8_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-08AGAMOUS-like 48