PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37387.3.p
Common NameBRADI_2g37387, LOC100837372
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 546aa    MW: 61496.6 Da    PI: 5.2196
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37387.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-114465143199
                       .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       +es t+tle   ++++W+ ++     +++++l+++W +Fv +n+++e D++vF   ++ ++ +++v+++++
  Bradi2g37387.3.p 446 HESGTVTLEVpGKSEKWQPRF--FVEKDACMLAGNWLDFVCDNQVQEEDICVFVPAKEeEKSKFMVHIISA 514
                       45669999995566*******..88888899***********************8877799999**99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-13407514IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-13407513IPR015300DNA-binding pseudobarrel domain
CDDcd100178.68E-12414513No hitNo description
PROSITE profilePS508638.938415515IPR003340B3 DNA binding domain
PfamPF023623.7E-9445514IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016926Biological Processprotein desumoylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004175Molecular Functionendopeptidase activity
GO:0016929Molecular FunctionSUMO-specific protease activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MRSLTPRQQG YVAKYGFEHF SRIGEFSVHE PLAEWIMGKI NPPFSELRIN TDKTIVFNRP  60
LVQKVLGVPA GGRPFVLHGQ KTEKIKQLRT LYLNNGLRAT IPHAVSLLKN NEDEESFVRT  120
FLLILLAAVL TPTTGNTIDL DYLWAFEDMS AVQDLDWAGH ITEHLMEEVR KFQYKSREEK  180
MTDFWVGGCL PLLMIAYMDH LDLPRGRIID REINYSVPRI CHVSKDDFQF TAIADLNRQH  240
YKFATFGILP FRDRTPYNDN PIIEETEIAE DDLHIPSKDY VLSGQWELEA HEERIYELGQ  300
GIQPEILAFA EASIDNSPPG RNGIGSNQGS KRFASCERGT SSHFRNTAKA DVTSPSSEES  360
GEDSAQQYES SESDDHPTPP EADYGVIFRN CLSGAQIEKV NTLIQKIQPG TVVFVATMRK  420
CDVQLPSPLL IVSKERALAA AARFPHESGT VTLEVPGKSE KWQPRFFVEK DACMLAGNWL  480
DFVCDNQVQE EDICVFVPAK EEEKSKFMVH IISAEATRSR GVKRARPSHD SPVVVDEQTA  540
NPSVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37387.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231769.10.0uncharacterized protein LOC100837372
TrEMBLI1HMC40.0I1HMC4_BRADI; Uncharacterized protein
STRINGBRADI2G37387.10.0(Brachypodium distachyon)