PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37430.1.p
Common NameBRADI_2g37430, LOC100822121
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 196aa    MW: 20694.8 Da    PI: 8.3439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000424870123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+++F++   L  H  +H
  Bradi2g37430.1.p 48 FVCKTCDRVFPSFQALGGHRASH 70
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-846110No hitNo description
PfamPF139121.7E-124772IPR007087Zinc finger, C2H2
PROSITE profilePS501579.394875IPR007087Zinc finger, C2H2
SMARTSM003550.124870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139127.7E-988112IPR007087Zinc finger, C2H2
PROSITE profilePS501578.55988115IPR007087Zinc finger, C2H2
SMARTSM003552.988110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMKRLFEEKE MARVLLLVSS RGGQAMPMPM PVCGRGDRAL GAPAERAFVC KTCDRVFPSF  60
QALGGHRASH KKPRLDGDGG DLAKPKLHGC SVCGLEFAVG QALGGHMRRH RAAAMASPPT  120
SPPAPETKTF KNHGGVKRGL VWLDLNHPPC GEDSDFGCGS DADGGECGRD MAAAAKLTFH  180
QFLDTGTMAV DCVGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9683332e-71EU968333.1 Zea mays clone 319090 ZFP16-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569008.11e-141zinc finger protein ZAT12
TrEMBLA0A0Q3R2P21e-139A0A0Q3R2P2_BRADI; Uncharacterized protein
STRINGBRADI2G37430.11e-139(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-18C2H2 family protein