PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37790.1.p
Common NameBRADI_2g37790, LOC100845584
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 373aa    MW: 42560.2 Da    PI: 8.4269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-067799123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C+ Cg +F+ + +Lk+H+++H
  Bradi2g37790.1.p 77 HDCEECGARFKKPAHLKQHMQSH 99
                      56*******************99 PP
2zf-C2H219.62.5e-06105129123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + C+   C+ s+srk++L+rH+ tH
  Bradi2g37790.1.p 105 FACHvdGCPFSYSRKDHLNRHLLTH 129
                       78*********************99 PP
3zf-C2H218.17.4e-06134159123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       + Cp   C++ Fs++ n++rH +  H
  Bradi2g37790.1.p 134 FICPmeGCNRKFSTRGNMQRHVQEmH 159
                       78*******************99877 PP
4zf-C2H218.55.4e-06171195123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp  +Cgk F+  s L++H  +H
  Bradi2g37790.1.p 171 FICPevNCGKAFKFASKLQKHEDSH 195
                       78*******************9888 PP
5zf-C2H216.91.7e-05262286223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC+ sFs ksnL +Hi+  H
  Bradi2g37790.1.p 262 KCHfeDCKCSFSKKSNLDKHIKAvH 286
                       7********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355123052IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-67496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00267799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.60777104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-1289131No hitNo description
Gene3DG3DSA:3.30.160.603.4E-1497131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.307105134IPR007087Zinc finger, C2H2
SMARTSM003550.0018105129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107129IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-7115165No hitNo description
Gene3DG3DSA:3.30.160.601.5E-7132160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.9E-5134159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053134164IPR007087Zinc finger, C2H2
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-6167195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032171200IPR007087Zinc finger, C2H2
SMARTSM003550.041171195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173195IPR007087Zinc finger, C2H2
SMARTSM003556.5203228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205228IPR007087Zinc finger, C2H2
SMARTSM0035513231252IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.41E-8242303No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6242283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.098261286IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863261291IPR007087Zinc finger, C2H2
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-5285314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.3292318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954292318IPR007087Zinc finger, C2H2
PROSITE patternPS000280294318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGERDFDGGD AGARETEPEA AAPVRDIRRY KCEFCDVVRS KKQLIRAHVL EHHKDEVDDL  60
EEYNEAAGGV QRKEITHDCE ECGARFKKPA HLKQHMQSHS SERPFACHVD GCPFSYSRKD  120
HLNRHLLTHQ GKLFICPMEG CNRKFSTRGN MQRHVQEMHK DGSPCESKKE FICPEVNCGK  180
AFKFASKLQK HEDSHAKLEY TEVICCEPGC MKTFTNVECL KAHNQSCHRY VQCDVCDTKQ  240
LKKNFKRHQR MHEGSRVAET VKCHFEDCKC SFSKKSNLDK HIKAVHEQSR PYACGFAGCG  300
KKFSYKHVRD NHEKSSAHVY FEGDFVESGP HPGGRKRKPI PVDTFTRKRV AAPGDVPTYA  360
DGTGYLRWLL SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-18652253157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-18652253157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-113TF3A_ARATH; Transcription factor IIIA
TrEMBLI1HMH60.0I1HMH6_BRADI; Uncharacterized protein
STRINGBRADI2G37790.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-116transcription factor IIIA