PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37961.1.p
Common NameBRADI_2g37961, LOC100822220
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 212aa    MW: 21540.6 Da    PI: 6.9853
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37961.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77.2e-42331321100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C++ C+lapyfp ++p+kfa++h++FGasn++kll++lpee+r da+ss+vyeA arardPvyGa+g i +lq+ql+ lka+
  Bradi2g37961.1.p  33 PCAACKILRRRCVDRCILAPYFPPTDPHKFAAAHRVFGASNIIKLLQDLPEEHRADAVSSMVYEAAARARDPVYGAAGAICQLQRQLDGLKAQ 125
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++ 
  Bradi2g37961.1.p 126 LARAHAD 132
                       **99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.60532133IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-4133130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MESSSCDTTA PPPHHSSASP QPQPATATVV LSPCAACKIL RRRCVDRCIL APYFPPTDPH  60
KFAAAHRVFG ASNIIKLLQD LPEEHRADAV SSMVYEAAAR ARDPVYGAAG AICQLQRQLD  120
GLKAQLARAH ADLAAARAHH AQLLALLCGA VEIAGAGHGS PPVAAAAVPV AAAPVVDAAL  180
LYVGDSAGAG AGGGGIMQAS PIGWADEPLW T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-403213310111LOB family transfactor Ramosa2.1
5ly0_B5e-403213310111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37961.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755107.11e-148LOB domain-containing protein 1
SwissprotQ9LQR03e-56LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK085e-56LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0Q3G8Q41e-147A0A0Q3G8Q4_BRADI; Uncharacterized protein
STRINGSi024430m3e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-51LOB domain-containing protein 11