PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g38380.1.p
Common NameBRADI_2g38380, LOC100838899
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 151aa    MW: 16135.1 Da    PI: 9.9973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g38380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.7e-132583563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      ++ +r+ +NRe+ArrsR+RK++++eeL  ++  L+aeN +   ++  +  e +k++ e+
  Bradi2g38380.1.p 25 RKRKRMLSNRESARRSRARKQQRVEELIAEASRLQAENARVEAQVGAYAAELSKVDGEN 83
                      57899**********************************99999999999888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.6E-182185IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.5E-122278No hitNo description
PROSITE profilePS5021711.3692386IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-102577No hitNo description
PfamPF001707.4E-102579IPR004827Basic-leucine zipper domain
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSRRSSSPES NIDGGSGSGS AGDERKRKRM LSNRESARRS RARKQQRVEE LIAEASRLQA  60
ENARVEAQVG AYAAELSKVD GENAVLRARH GELAGRLQAL SGVLEIFQVA GAPVDIPEIP  120
DPLLRPWQSP FAPQLIPATA AGAMADAFQF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744RRSRARKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g38380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3341281e-177AB334128.1 Triticum aestivum Wlip19d mRNA for basic region/leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569062.11e-102ocs element-binding factor 1
TrEMBLI1HMP71e-101I1HMP7_BRADI; Uncharacterized protein
STRINGBRADI2G38380.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-24basic region/leucine zipper motif 53