PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g39700.1.p
Common NameBRADI_2g39700, LOC100832954
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 392aa    MW: 43767.7 Da    PI: 8.0525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g39700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001391113323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+  +Cgk+F +   L++H  +H
  Bradi2g39700.1.p  91 CSyeNCGKTFVDVAALRKHAHVH 113
                       77779**************9887 PP
2zf-C2H220.21.5e-06118142123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y Cp   Cgk F ++s LkrH  tH
  Bradi2g39700.1.p 118 YICPepGCGKKFVDSSKLKRHNLTH 142
                       89*******************9998 PP
3zf-C2H218.55.7e-06148172123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp   Cgk Fs   nL+ H++tH
  Bradi2g39700.1.p 148 FICPhpGCGKAFSLDFNLRAHLKTH 172
                       789*********************9 PP
4zf-C2H212.30.0005178202123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk+F++ + Lk H + H
  Bradi2g39700.1.p 178 HVCPfpACGKRFTSDYKLKCHVKAH 202
                       789999****************988 PP
5zf-C2H213.30.00024248273123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y+Cp   Cgk + + + L+ H +t H
  Bradi2g39700.1.p 248 YVCPyeGCGKAYIHGYKLNLHFKTqH 273
                       99********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-1285115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09489118IPR007087Zinc finger, C2H2
SMARTSM003550.01689113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-892142No hitNo description
Gene3DG3DSA:3.30.160.601.1E-13116138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2E-4118142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.838118147IPR007087Zinc finger, C2H2
PROSITE patternPS000280120142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-12129182No hitNo description
Gene3DG3DSA:3.30.160.604.1E-18139173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759148177IPR007087Zinc finger, C2H2
SMARTSM003550.0014148172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-7175203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.827178207IPR007087Zinc finger, C2H2
SMARTSM003550.16178202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
SuperFamilySSF576678.33E-6243273No hitNo description
Gene3DG3DSA:3.30.160.601.1E-8244273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.023248273IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785248281IPR007087Zinc finger, C2H2
PROSITE patternPS000280250273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEYAAAGSGG YYYHQPSHPQ QPQTLRRRPR PAARWVKQWI PQDLASPGAK CALFKWVRED  60
VYRNLKENPN GPEPETQARK PEPATEILFL CSYENCGKTF VDVAALRKHA HVHGERQYIC  120
PEPGCGKKFV DSSKLKRHNL THTGQKDFIC PHPGCGKAFS LDFNLRAHLK THALENYHVC  180
PFPACGKRFT SDYKLKCHVK AHEKTGSPVA VQHTPPAENP QNTIKPSTQA APKPSPPVPA  240
TFSADRPYVC PYEGCGKAYI HGYKLNLHFK TQHPEHSQEE SGRLPAPPGE YAANQYSYAE  300
VGEHHAPNPK RSKTNPAHKA VPPSKPYNVK ISSRMSADTS GAKNQWPGKG MYDDDSEETE  360
EDHGGNKNNV EEGWRYGNQN ADDEETEEDE S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-34912048119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g39700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569122.10.0zinc finger transcription factor YY1
TrEMBLI1HN530.0I1HN53_BRADI; Uncharacterized protein
STRINGBRADI2G39700.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-102C2H2 family protein