PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g39970.1.p

Common Name

BRADI_2g39970, LOC100831834

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 292aa MW: 31883 Da PI: 5.1849

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g39970.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2e-10	158	207	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ +Er RR++i +++ L++l+P + +k Ka++L + + Y++sLq Bradi2g39970.1.p 158 RDSHSLAERVRREKISEKMLLLQSLVPGC----DKVTGKAMMLDEIISYVQSLQ 207 899***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.2E-18	153	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-18	153	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.19E-12	154	211	No hit	No description
PROSITE profile	PS50888	15.656	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEGFFSTHHE HHHSYYEDPE PLTTPLGFSA SCRNLETAAA AAMAYESSSS SPLASMVYSP 60 PLLLLQQQGS FPPFDEDEAL LAAAVGGDDK RRMVSIERSG TTSLGSAQEM DGSRKHQRNN 120 NVASVKEKRP REHGGADVDV KEAPAGYIHV RAKRGQARDS HSLAERVRRE KISEKMLLLQ 180 SLVPGCDKVT GKAMMLDEII SYVQSLQNQV EFLSMKLASL NPMMMYEFGV DIGMYPDAPQ 240 VMATGAVPVL LPHTSLVETT GLAAQNGSSV SEMQQLQGLL QQEEFSCFFD Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g39970.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231876.1	0.0	transcription factor bHLH76
TrEMBL	I1HN85	0.0	I1HN85_BRADI; Uncharacterized protein
STRING	BRADI2G39970.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16793	12	12
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi2g39970.1.p
Entrez Gene	100831834