PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g40026.1.p
Common NameBRADI_2g40026
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 355aa    MW: 39454.2 Da    PI: 10.753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g40026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.13.7e-32101441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd.kkyatgkrknratksgyWkatgkdkev 92 
                       +p GfrF+Ptd+elvv+yL+++++g++++l   i++++i++++P +Lp++   + +ewyfF+ +d +ky++ +r+nr++++g+Wk  g+ + +
  Bradi2g40026.1.p  10 VPIGFRFKPTDQELVVDYLQRRAAGQPCPL--PIANIEIHNLNPYNLPSMPLFGGHEWYFFTMKDhRKYSKRSRPNRSAATGFWKVNGRGELI 100
                       589************************999..8***************65556899*****9775278999******99**********9999 PP

               NAM  93 lsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                         +  +           + +kk+ vf+ g  p+ +kt W+mh y+l
  Bradi2g40026.1.p 101 SLQqnH--GdvivdlqpIAIKKVHVFHIGCPPTERKTPWMMHTYSL 144
                       997551..245566666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-394163IPR003441NAC domain
PROSITE profilePS5100538.05110164IPR003441NAC domain
PfamPF023651.0E-1911144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAMPVLLSNV PIGFRFKPTD QELVVDYLQR RAAGQPCPLP IANIEIHNLN PYNLPSMPLF  60
GGHEWYFFTM KDHRKYSKRS RPNRSAATGF WKVNGRGELI SLQQNHGDVI VDLQPIAIKK  120
VHVFHIGCPP TERKTPWMMH TYSLIGPIPL DGTIEWVLCK IFRDTKMILP PPPPPGPGPA  180
EISDVNGSGS SAGPLQPSAK NPLREKSTLS NGRQKAQHLP LLDAHNVARS QATATARSHD  240
AAAAARSQRG SASSPFAAAA TRSHEATHRR PRPFDFNVLP LPDLREAAPP REEQPPDTQP  300
REEQPMVIRK KKKRHQPVEE MKLGAAARDG GIKSQRGERS QEPEMRKKRH TNKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-38416311164NO APICAL MERISTEM PROTEIN
1ut4_B3e-38416311164NO APICAL MERISTEM PROTEIN
1ut7_A3e-38416311164NO APICAL MERISTEM PROTEIN
1ut7_B3e-38416311164NO APICAL MERISTEM PROTEIN
3swm_A3e-38416314167NAC domain-containing protein 19
3swm_B3e-38416314167NAC domain-containing protein 19
3swm_C3e-38416314167NAC domain-containing protein 19
3swm_D3e-38416314167NAC domain-containing protein 19
3swp_A3e-38416314167NAC domain-containing protein 19
3swp_B3e-38416314167NAC domain-containing protein 19
3swp_C3e-38416314167NAC domain-containing protein 19
3swp_D3e-38416314167NAC domain-containing protein 19
4dul_A3e-38416311164NAC domain-containing protein 19
4dul_B3e-38416311164NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313RKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g40026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314606.11e-134NAC domain-containing protein 41
TrEMBLA0A0Q3G9Z80.0A0A0Q3G9Z8_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5006622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-39NAC domain containing protein 3