PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g42023.1.p
Common NameBRADI_2g42023, LOC100843345
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 192aa    MW: 21287.5 Da    PI: 6.5061
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g42023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30114172159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +dDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY+g H+h+
  Bradi2g42023.1.p 114 MDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERERDDARFVITTYHGVHDHP 172
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32102174IPR003657WRKY domain
SuperFamilySSF1182903.79E-28107174IPR003657WRKY domain
PROSITE profilePS5081132.145109174IPR003657WRKY domain
SMARTSM007743.5E-35114173IPR003657WRKY domain
PfamPF031066.0E-24115172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSYLLSMSP VDEIGGYVDD GSDDMTAGYL SFDIDEYYLP EADHALYTGQ QAAADPPVAH  60
SLQADDADSY KSGSKAASSE GLSYHDKINN HQSLTSAGKS CKIAFKTRSE VEVMDDGYRW  120
RKYGKKMVKN SPNPRNYYRC SSEGCRVKKR VERERDDARF VITTYHGVHD HPAPLPPRGC  180
AGYSLAQPHY Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-24102174274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g42023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274035e-96KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds.
GenBankKT7289105e-96KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds.
GenBankKT8658775e-96KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds.
GenBankKT8658785e-96KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566817.11e-141probable WRKY transcription factor 75
TrEMBLA0A0Q3R4M91e-140A0A0Q3R4M9_BRADI; Uncharacterized protein
STRINGTraes_3B_E408A7B56.11e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-38WRKY DNA-binding protein 50