PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g42936.1.p

Common Name

BRADI_2g42936

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 163aa MW: 18557.4 Da PI: 11.842

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g42936.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9e-14	11	55	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd +l ++ ++ ++W+++ar m+ gR+ k c++rw+++l Bradi2g42936.1.p 11 GWTAEEDARLEKLATENRFRHWHRVARQMP-GRSHKLCRDRWRDHL 55 6***************************.**********986 PP
2	Myb_DNA-binding	30.1	1.1e-09	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ +d l++ ++++Gg+ Wk I+r++ Rt +k rw + Bradi2g42936.1.p 63 AFTAADDAELARQHRRHGGR-WKDISRHVH-ARTTRVLKRRWKEL 105 79****************.*****.*********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.196	5	59	IPR017930	Myb domain
SMART	SM00717	6.7E-8	8	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.88E-19	8	102	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-11	11	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-17	12	65	IPR009057	Homeodomain-like
CDD	cd00167	3.63E-9	12	55	No hit	No description
SMART	SM00717	1.7E-6	60	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	10.56	62	110	IPR017930	Myb domain
CDD	cd00167	1.64E-5	63	106	No hit	No description
Pfam	PF13921	1.5E-7	64	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-10	66	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MLIVRLRLRR GWTAEEDARL EKLATENRFR HWHRVARQMP GRSHKLCRDR WRDHLARDLY 60 SRAFTAADDA ELARQHRRHG GRWKDISRHV HARTTRVLKR RWKELLRKKN GAEKMEASTS 120 PTLQHPLADV LAAGLSSCSL GGGPAGDPRL GSLALGFACM AV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-15	12	109	7	104	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-15	12	109	7	104	C-Myb DNA-Binding Domain
1msf_C	5e-15	12	109	7	104	C-Myb DNA-Binding Domain
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	100	RVLKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g42936.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314259.1	1e-113	transcription factor MYB73-like
TrEMBL	A0A0Q3J7Z2	1e-112	A0A0Q3J7Z2_BRADI; Uncharacterized protein
STRING	LPERR07G10060.1	6e-55	(Leersia perrieri)
STRING	LPERR07G10290.1	6e-55	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35
Representative plant	OGRP10428	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-17	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Bradi2g42936.1.p