PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g43290.1.p
Common NameBRADI_2g43290, LOC100839907
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 201aa    MW: 21212.8 Da    PI: 7.4468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g43290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-191964247
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      +i n s rqvtfskRr g +KK +EL +LC+a+v +++fs+ g+++
  Bradi2g43290.1.p 19 PIANRSSRQVTFSKRRSGFFKKGSELAILCGARVVLVVFSEVGNVF 64
                      799**************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.0671070IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-241069IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-221176IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-171232IPR002100Transcription factor, MADS-box
PfamPF003195.0E-202064IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-174768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVRPRGKSST GRHRIEMSPI ANRSSRQVTF SKRRSGFFKK GSELAILCGA RVVLVVFSEV  60
GNVFALGSPS ADAVLDGGTG PDEGEREALE GMCRAREEAA ERVAAETAGM DSIGDKVAQA  120
QVGRRSWWEA DVEMLGEAEL PEFARALKRF RDDVRRHADK LLSAPPAAAA VAAPAPCTTA  180
TAAVSPGTHG DPSASDSWAY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g43290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693430.0KF469343.1 Brachypodium distachyon MADS-box transcription factor 49 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288327.11e-142agamous-like MADS-box protein AGL62-like
TrEMBLI1HPB81e-141I1HPB8_BRADI; MADS-box transcription factor 49
STRINGBRADI2G43290.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-21AGAMOUS-like 62
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]