PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g43340.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 275aa    MW: 29287.2 Da    PI: 4.5657
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g43340.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.99.4e-14542441
               TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                       +C+C+k+ Cl++YC Cf+a  +C++eC+C++C N+++
  Bradi2g43340.3.p  5 PQCTCEKTACLQRYCHCFEASWYCTDECSCHGCLNTSD 42
                      68*********************************987 PP
2TCR482.4e-1595133240
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       + kgCnC+ks C+k+YCeCf+ ++ C+ +C+C +C Nk 
  Bradi2g43340.3.p  95 HVKGCNCRKSGCKKLYCECFKLHVGCTAKCHCVGCANKF 133
                       789**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-6243IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.8663134IPR005172CRC domain
PfamPF036381.2E-10640IPR005172CRC domain
SMARTSM011146.3E-1394135IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-1197132IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDDRPQCTCE KTACLQRYCH CFEASWYCTD ECSCHGCLNT SDNQTEVEEH TDNIMRKKPD  60
AFKPKIADSG GIDDVPAQPH DGAPSSSGVP PARTHVKGCN CRKSGCKKLY CECFKLHVGC  120
TAKCHCVGCA NKFGAKAASE GTDNHSPNGT SGGSGGTTAG SNDGASSILG DDMYDLPIEP  180
SLVDDFFATR PDLDPCWSFD LGPIQATGDG GVDVFFDPGD CSQHNVDPQT HEGFMQADEA  240
LHNSANSVLQ QDPANPDICN VNENGSQIIK INRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-12413111120Protein lin-54 homolog
5fd3_B3e-12413111120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g43340.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313974.11e-161protein tesmin/TSO1-like CXC 2
TrEMBLI1HPC30.0I1HPC3_BRADI; Uncharacterized protein
STRINGBRADI2G43340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-28Tesmin/TSO1-like CXC domain-containing protein