PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g44540.1.p
Common NameBRADI_2g44540, LOC100832133
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 233aa    MW: 25188.1 Da    PI: 9.5321
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g44540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.17.4e-274594356
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                      + +Y+eCl+NhAa+ Ggh+vDGC+Efm++    +  + l+CaACgCHR+FHRr 
  Bradi2g44540.1.p 45 QQQYHECLRNHAAAAGGHVVDGCCEFMAA----SPDDPLTCAACGCHRSFHRRG 94
                      679*************************9....4458***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-104293IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-214793IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-224794IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.0444894IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.0E-27147218IPR009057Homeodomain-like
SuperFamilySSF466894.78E-17152218IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-24161217IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFREEDGDG AGAAPVALHH HSTTTANRAA PVGMHAPEPR RQQTQQQYHE CLRNHAAAAG  60
GHVVDGCCEF MAASPDDPLT CAACGCHRSF HRRGDTSLPL LAAAANTRAA APPLLLPAGN  120
SKQQQRLAPF LPYGLAPSAG ATTTESSSEE RRGPATTAPR RRSRTTFTRE QKEQMLAFAE  180
RVGWRMQRQD EASVERFCAE AGVRRQALKV WMHNNKQSSG TGRRQLQKPS GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251612181875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g44540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-81HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232067.11e-170zinc-finger homeodomain protein 5
SwissprotQ688U37e-57ZHD6_ORYSJ; Zinc-finger homeodomain protein 6
TrEMBLI1HPS01e-169I1HPS0_BRADI; Uncharacterized protein
STRINGBRADI2G44540.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-23homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]