PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g45770.1.p
Common NameBRADI_2g45770, LOC100845292
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 92aa    MW: 10259.2 Da    PI: 7.5249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g45770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-092064344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W+  E +l+ +a + +G g   +W +++r +g ++t+ +++ ++
  Bradi2g45770.1.p 20 DWSRKENKLFEEALAYYGEGtpdRWQKVSRAIGGTKTADEVRRHY 64
                      5*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.011672IPR017884SANT domain
SMARTSM007177.8E-71770IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-51969IPR009057Homeodomain-like
SuperFamilySSF466892.39E-121975IPR009057Homeodomain-like
PfamPF002491.2E-72064IPR001005SANT/Myb domain
CDDcd001674.94E-52164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSAGSRSSS TRRGANAASD WSRKENKLFE EALAYYGEGT PDRWQKVSRA IGGTKTADEV  60
RRHYEILFDD VDLIESGRLP FPQYNTQGAW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2421881177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g45770.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935935e-76FP093593.1 Phyllostachys edulis cDNA clone: bphylf056b16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.13e-62protein RADIALIS-like 3
SwissprotQ6NNN04e-26RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1HQ426e-61I1HQ42_BRADI; Uncharacterized protein
STRINGBRADI2G45770.11e-61(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-25RAD-like 1