PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g45900.1.p
Common NameBRADI_2g45900, LOC100823678
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 382aa    MW: 39690.9 Da    PI: 7.8245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g45900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.7e-33184241259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp vv++tYeg+H+h+
  Bradi2g45900.1.p 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCVVKKRVERSFQDPAVVITTYEGKHTHP 241
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-34168243IPR003657WRKY domain
SuperFamilySSF1182901.96E-29175243IPR003657WRKY domain
PROSITE profilePS5081132.214178243IPR003657WRKY domain
SMARTSM007745.7E-39183242IPR003657WRKY domain
PfamPF031069.1E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSGEFQFHDE LASLFAQRPG SGMQQHQQQE QQQASWFADY LQAGTPMAMD YDLLCRALEL  60
PVVEDVVKME QVVDAAGGGA LTPSGGTGGG TPNTTSSMSS SSSEAGGGGG GGSGGGGAGD  120
QGDSAGRCKK EEGDGEGGKG DDDEGDKSKK GAAAGKGGKA GKGEKRPRQP RFAFMTKSEV  180
DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCVVKKRV ERSFQDPAVV ITTYEGKHTH  240
PIPSALRGST HLLAAQAAHL HHQHLHGAGG HLGFGGAPGS PFVRNAGAGG IDVLGGLLQP  300
RAHHHHGAMA PPMSHGQQQL GGSVSTSVGS ALATAASSSP PSLQMQHFMS QDFGLLQDML  360
PSFIHGANSN QPPSSPYGKL H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27174244878Probable WRKY transcription factor 4
2lex_A1e-27174244878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g45900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580521e-162AK358052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067K13.
GenBankAK3668371e-162AK366837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569516.10.0probable WRKY transcription factor 71
TrEMBLI1HQ590.0I1HQ59_BRADI; Uncharacterized protein
STRINGBRADI2G45900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-49WRKY DNA-binding protein 71