PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46190.1.p
Common NameBRADI_2g46190, LOC100829904
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 698aa    MW: 76548.1 Da    PI: 7.3613
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24138238198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++   s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + 
  Bradi2g46190.1.p 138 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLPR-PSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 227
                       99****************************986664.5579************************************************..44 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       +++el+++v+r
  Bradi2g46190.1.p 228 EDGELRLGVRR 238
                       99999***998 PP
2Auxin_resp101.61e-33264344182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++ ks+F+v+YnPr ++seF+++++k+++++ +++s+GmRfkm++e+ed+serr +G+++g +++dp +  +SkW++L
  Bradi2g46190.1.p 264 VAHALAVKSTFHVYYNPRLCQSEFIIPYWKFMRSVGQPFSAGMRFKMRYENEDASERRSTGIIIGSRESDP-KSYGSKWKCL 344
                       699********************************************************************.999******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-39135241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-41135244IPR015300DNA-binding pseudobarrel domain
CDDcd100174.82E-23136238No hitNo description
SMARTSM010195.5E-23138240IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31138240IPR003340B3 DNA binding domain
PfamPF023623.5E-22138238IPR003340B3 DNA binding domain
PfamPF065072.4E-27264344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MMGIDLNTVE EDEEEGGAAA EPARGAVCLE LWHACAGPVG PLPRKGSAVV YLPQGHLEHI  60
GDAGSAAAKV PPHVFCRVVD VNLQADAATD EVYAQVTLAV DNEESKRRVR DGENEEARDG  120
DGEDADAMKR LPRIPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS LPRPSQELVA  180
KDLHGTEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGVRRVA  240
QLKNVSPFPA PHNQDPGHSS LGNVAHALAV KSTFHVYYNP RLCQSEFIIP YWKFMRSVGQ  300
PFSAGMRFKM RYENEDASER RSTGIIIGSR ESDPKSYGSK WKCLVVRWDD DIEGRRPNRV  360
SPWDIELTGA VSGSHLSIHH SKRMKPCLPQ VNPDMLLPSG SVSSDFAESA RFHKVLQGQE  420
LLGFKTHEGT VSASSQASEA RSFQYTDERS CSINMSNVAG VPRLGAGTPP GNHGFSYHCS  480
GFGESQRFQK VLQGQEVFRP YRGGTLSDAV IRGSGFCQRD GNHASGATYK WLAPQGCDYH  540
GPTPAMPQAS SPSSVLMFPQ ISSKIPSFEY VYRSLDKDEN ISLNPTQGMG RTNRTLPLWP  600
HLVSGKVIDE CTGSEKLQTP DKGPEHEPNV CKIFGISLTQ KVQAGDEVDC GNGNYSSRHL  660
SSKPQMPKSL RNSCATVHEQ RPAVGMVVDV SAVDMMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1042637418361Auxin response factor 1
4ldy_B1e-1042637418361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46190.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569536.10.0auxin response factor 2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLI1HQ900.0I1HQ90_BRADI; Auxin response factor
STRINGBRADI2G46190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Representative plantOGRP66851018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-160ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]