PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g46320.1.p

Common Name

BRADI_2g46320, LOC100833177

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 321aa MW: 35033.5 Da PI: 10.3205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g46320.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.9	1.3e-13	18	104	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ aL++ ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ s +p+++ql+ Bradi2g46320.1.p 18 CWSEGETSALVDSWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTT------SPWPFYNQLD 104 7*****************************************999999****************9998885......57****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-24	16	104	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDGKLPPPNP NLPYREDCWS EGETSALVDS WGSRYLELNR GSLRQPQWRE VADAVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTTSPWPFY NQLDILVGPT LSASAAAASK 120 KPSPPRGLPM MMRRRPSPSR SPSPPSPAPP MALPLPNYRR GSNLPSADLF HKAAAAAAAA 180 VDSDSDDGYN NNNNYDDDEG SQQSPSRSVS SRSGGNGAPA LGGGGSSKRK RGGSGGFGEL 240 AMAMETFAEM YERMEAAKQR HAEEMERQRI KFLKDLELKR MQAFVDMQLQ LARVKHAKNG 300 TSEMLMSLAA LPFLSNPAYL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g46320.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363595	0.0	AK363595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017C07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003569548.1	0.0	trihelix transcription factor ASIL2
TrEMBL	I1HQA8	0.0	I1HQA8_BRADI; Uncharacterized protein
STRING	BRADI2G46320.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-28	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Bradi2g46320.1.p
Entrez Gene	100833177