PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46427.1.p
Common NameLOC100830721
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 557aa    MW: 59919.3 Da    PI: 8.407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46427.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.25.6e-22131435126
               NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgkd 89 
                       f  hPtd el+++yLk+ v++ + +  ++i+++d+y ++P+dL +      ++ +++ wyfF++ + k+++g+rk+r++    +g W++    
  Bradi2g46427.1.p  13 FSSHPTDLELIDNYLKPWVTTGDRPW-KFIHDADVYAANPEDLARtfspaLASDGQEAWYFFTPLRAKSRRGQRKSRTVGsgdDGCWHSERAA 104
                       5669*******************999.89**************844666444457789*******************876455789******* PP

               NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmhey 126
                       k+++s   + +++g ++ + f ++ + + +++ W+m e 
  Bradi2g46427.1.p 105 KPLFSGivHIRQIGYRQAFSFTTKVDGRLVRSGWLMAEI 143
                       ****98888889**********9999999*******997 PP
2NAM71.32.6e-222804067126
               NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkev 92 
                        hP+d++l++ yL +++++ ++++ ++ ++vd+y +eP  L  +    +++ +ek wyfF++   k  +g+r+ r++   +g W++    ++v
  Bradi2g46427.1.p 280 KHPSDQDLIKSYLIPRLASGEHPC-KFTHDVDVYAAEPAVLSgQyspaTASDGEKAWYFFTTLPAKRIRGQRRPRTVGsgQGCWHSESGVRDV 371
                       59*******************999.89**************84366655556889********************86634788********** PP

               NAM  93 lskkgelvglkktLvfykgrapkge..ktdWvmhey 126
                       ++ +++++g+++ + f k++++ g+  +t W+m e 
  Bradi2g46427.1.p 372 VD-GDRQIGCRQFFSFMKKDEECGKslRTGWIMVEL 406
                       **.999***********99888877669*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.4079163IPR003441NAC domain
PfamPF023656.9E-1411142IPR003441NAC domain
SuperFamilySSF1019417.19E-3113163IPR003441NAC domain
PROSITE profilePS5100529.823274428IPR003441NAC domain
PfamPF023652.3E-12276406IPR003441NAC domain
SuperFamilySSF1019411.57E-31277428IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAPIRRGAPR PDFSSHPTDL ELIDNYLKPW VTTGDRPWKF IHDADVYAAN PEDLARTFSP  60
ALASDGQEAW YFFTPLRAKS RRGQRKSRTV GSGDDGCWHS ERAAKPLFSG IVHIRQIGYR  120
QAFSFTTKVD GRLVRSGWLM AEIGLTPSGS SEEELVLCKV YRTPREAPPT GSTAAARRVV  180
PKIGRGKAGE CSASSEENAS GAGPAKASVY SAQPARASSS TDSAATESDS DQDSSSHVAC  240
RPPQVPFLPS SPIRRTSAAP RVAAVPSGSS APPTRPDFAK HPSDQDLIKS YLIPRLASGE  300
HPCKFTHDVD VYAAEPAVLS GQYSPATASD GEKAWYFFTT LPAKRIRGQR RPRTVGSGQG  360
CWHSESGVRD VVDGDRQIGC RQFFSFMKKD EECGKSLRTG WIMVELGLNY GEHKGSSDEL  420
VLYKVYRSPR AGPATDADST AATESSGRKR KASEENSGAE SPARGTKKST APAASGRKKT  480
DDKSYGAAAC PPQLCTRCRI ETAESHSGTA CEEDETRGGS ETGLLENDSL TDESAAPRGH  540
ERGESSGSGR TFYHFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-111116617171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46427.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566991.20.0uncharacterized protein LOC100830721
TrEMBLA0A2K2DE770.0A0A2K2DE77_BRADI; Uncharacterized protein
STRINGBRADI2G46430.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1201646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-16NAC domain containing protein 47