PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46527.3.p
Common NameBRADI_2g46527, LOC100837384
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 255aa    MW: 28635.8 Da    PI: 9.8731
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46527.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.73.5e-2262138371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr +++    ++ek+e+ g++t+neva+e +se           ++kn rRR+YD++NVL al++i+k ek+ei+w+g
  Bradi2g46527.3.p  62 GWGLREYSKI---VCEKVEAkGRTTYNEVADEVYSElksmahigqgfEEKNVRRRVYDAFNVLIALRVIAK-EKKEIKWMG 138
                       689*******...*******9**************************999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3456143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-2060138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.39E-1763139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.1E-1864138IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.35E-22143240IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.1E-25145245No hitNo description
SMARTSM011385.1E-13145248IPR014889Transcription factor DP, C-terminal
PfamPF087812.6E-18146241IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPPRGDTAA AASASLDLTG VHILEASMPP PLPECGGNAA ERKEEGDKNR KKEKAETQRI  60
TGWGLREYSK IVCEKVEAKG RTTYNEVADE VYSELKSMAH IGQGFEEKNV RRRVYDAFNV  120
LIALRVIAKE KKEIKWMGLS NYRYETIKKL EEVRKELNNR IKNKKKLLKE IGKQNIKLRN  180
QTLQSSAENA NGIQLPFLLV KTSRKASVEI EISEDSKFAR FEVTGAPFTL HDDLSILEGM  240
RHNSIARADL GTLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2642139189PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46527.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2719170.0AJ271917.1 Triticum sp. mRNA for DP protein (dp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754350.11e-180transcription factor-like protein DPB isoform X1
TrEMBLA0A2K2DEB40.0A0A2K2DEB4_BRADI; Uncharacterized protein
STRINGBRADI2G46527.11e-132(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-46Transcription factor DP