PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46980.1.p
Common NameBRADI_2g46980, LOC104583318
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 389aa    MW: 43237.9 Da    PI: 4.2597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.13.4e-23161406128
               NAM   6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        F+P+  e v+++L + ++g++    +e+ i++vdiy++eP+dL +    + kae++ + +fF+ +++++ + +r+ r++ +g+W  + k+++
  Bradi2g46980.1.p  16 SFNPSPVEAVTYFLPRLISGEPlpRGAEHLIHRVDIYNHEPKDLAAafapAPKAERTgDRFFFTLSKRQKGSRTRTARVAGAGTWTIQ-KTRD 107
                       7*********************53333456**************8545653333333477*************************965.77** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v +++g +vg +++L f kg+a    +t+Wvm+eyr 
  Bradi2g46980.1.p 108 VNDESGLKVGERRSLCFRKGKA----STSWVMEEYRC 140
                       *****************97776....579******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.00811160IPR003441NAC domain
PfamPF023651.4E-1115139IPR003441NAC domain
SuperFamilySSF1019413.27E-2416159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEEAEAELGE VFYLCSFNPS PVEAVTYFLP RLISGEPLPR GAEHLIHRVD IYNHEPKDLA  60
AAFAPAPKAE RTGDRFFFTL SKRQKGSRTR TARVAGAGTW TIQKTRDVND ESGLKVGERR  120
SLCFRKGKAS TSWVMEEYRC LRPDAIVDDG EMVFCKIHLS SKPRPEAQQE SAAYLRRHQE  180
LAKNQPPMPV AKRPAPCAAD PPSPKRARVA SLTPAVAESD GGDSNAFASL LEEDMLGAVS  240
SQDEIAPINI DDYIDRFTCS IHEFLGGATD PEEAATLPAD EPENDFDNSM ASDEEFNFDI  300
PLLSNSSMVF NLNGEDSFNL LDNDLYDYKL QTDDGEQQQA GLTSDDESWA MTAEDEGFMR  360
LMGSYTPWPT MFTLDQLEGH NEFFSYVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233490.10.0uncharacterized protein LOC104583318
TrEMBLI1HQI80.0I1HQI8_BRADI; Uncharacterized protein
STRINGBRADI2G46980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Representative plantOGRP9262314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.16e-14NAC domain containing protein 2