PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48057.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 307aa    MW: 34237.6 Da    PI: 7.8151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.4e-1689184294
                       EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +k+l +sd +++gr++lpkk ae++       ++ +k l + d ++ + W++k++y  ++ks++yvl+ ++ ++v+a++L++gDf++++ d++
  Bradi2g48057.1.p  89 QKELRNSDISQLGRIILPKKEAEAYlpilT--SKDGKSLCMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRAHNLQVGDFIMIYKDDN 178
                       79999**********************653..446778*****7888*********89999999**99.********************5544 PP

                       SEE..EE CS
                B3  88 sefelvv 94 
                        + ++v+
  Bradi2g48057.1.p 179 -NNRFVI 184
                       .333344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2486189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-2487188No hitNo description
SuperFamilySSF1019362.16E-1987185IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-1388190IPR003340B3 DNA binding domain
PROSITE profilePS508639.48888190IPR003340B3 DNA binding domain
PfamPF023626.7E-1389184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDGVSSKRRS PSASSTSTSS GDVTSAARTQ RVTRKRRSGG RGPRRGGLRR PPAHRPVSAS  60
EFTVNEMDLN RAVFDPDHQV LAGLHVILQK ELRNSDISQL GRIILPKKEA EAYLPILTSK  120
DGKSLCMHDL LNAQLWTFKY RYWPNNKSRM YVLENTGDYV RAHNLQVGDF IMIYKDDNNN  180
RFVIRAKKAG DDLAATVPQI DEHISVMLPK PEVDDYMSLI SPQADISAFM PQADENYEIF  240
DGILNSLPEI PAANVRYSDF FNPFDDSMDM SNPGLNANNS VNLMTHFHDD KAGLSLFPNP  300
KSGPLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-43841921109B3 domain-containing transcription factor FUS3
6j9b_D9e-43841921109B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237TRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754315.10.0B3 domain-containing protein LFL1 isoform X1
SwissprotA4LBC01e-130LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLI1HQW80.0I1HQW8_BRADI; Uncharacterized protein
STRINGBRADI2G48057.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]