PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g48090.1.p

Common Name

BRADI_2g48090, LOC100820905

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WRKY

Protein Properties

Length: 217aa MW: 23069.6 Da PI: 7.5344

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g48090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	131	189	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++d ++v ++Yeg Hnh Bradi2g48090.1.p 131 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDADYVLTMYEGIHNHA 189 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-31	118	191	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-27	124	191	IPR003657	WRKY domain
PROSITE profile	PS50811	30.217	126	191	IPR003657	WRKY domain
SMART	SM00774	1.4E-33	131	190	IPR003657	WRKY domain
Pfam	PF03106	2.1E-23	132	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAVAAAEAAG TAAYRYHHPH AAADAVACRS MASSPYSSAS AAPSFCPAPF NGVQQQLDVL 60 DYFSDDGGPS AVPGTFDTPL QLPPRAPTEA PIVPDVGGYF TAHPRSTAAA AVAAGTTDKI 120 AFRTKSKEEV LDDGYKWRKY GKKSVKNSPN PRNYYRCSTE GCNVKKRVER DRDDADYVLT 180 MYEGIHNHAS PGTVYYAAQD ATSGRFFVAG TYLSGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	119	191	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g48090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003569675.1	1e-158	WRKY transcription factor WRKY62
Swissprot	Q93WU9	1e-37	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	I1HQX3	1e-157	I1HQX3_BRADI; Uncharacterized protein
STRING	BRADI2G48090.1	1e-158	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	4e-37	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Bradi2g48090.1.p
Entrez Gene	100820905

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]