PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48597.1.p
Common NameBRADI_2g48597, LOC100831234
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 728aa    MW: 83454.6 Da    PI: 7.0847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48597.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.63.9e-1712110299
                       EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       fkvl     ++ +rl +p++f+ ++        + + ++s +++l++++ ++W v+l  +k ++r+++t+GW++Fv++n L+e +f++F++d 
  Bradi2g48597.1.p  12 FKVL--VGDFA-RRLEIPRDFLCHIpdvggrrsDTSVASSAQVMLKHSKWKTWPVEL--EKVDRRVFMTTGWSRFVEDNSLREYEFLLFRYD- 98 
                       5555..33444.4699*****97779999888755556999****************..*******************************96. PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        ++ +++v+vf +
  Bradi2g48597.1.p  99 -MDLHFMVSVFGR 110
                       .566669999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-188113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-198113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7318111IPR003340B3 DNA binding domain
CDDcd100171.66E-149108No hitNo description
SMARTSM010191.6E-1511111IPR003340B3 DNA binding domain
PfamPF023623.3E-1413110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MEEEGKGRHR FFKVLVGDFA RRLEIPRDFL CHIPDVGGRR SDTSVASSAQ VMLKHSKWKT  60
WPVELEKVDR RVFMTTGWSR FVEDNSLREY EFLLFRYDMD LHFMVSVFGR NACEKAIRYS  120
GSGAQATGNL EAKLRSDICP SNRRGHSADK LTEIANGLMH SHSLVKTPDQ FDTEGFADLH  180
LHEVGGSKDE LRTCLLLKGP MEDDKAKTMT EVMRRLHLDK VTIELFCAIL CLYKWNVDAA  240
AEDFDICRGK PQTQNQFLKK KLVLQFDFIK IQLRRFFPLE DDCSTQICDS RNSSLDEPNL  300
LSEPLQCDQS AVKRKLVDDH VLCDLSCKQK RRIGKSRTQQ TSETPRRSPR LARLNISHDS  360
IESLLKERPE VLESSPTSTI DRVEDRAGQA RLLNKKPGSV LQGDCKNMIG SFPQDCKRLK  420
SARGDMVPSE EPAHSEETFE EQINRNALET SESLIRTGVM ESSPPTNSKV SAPLKMNELY  480
LTWKPSLHAN PIEKILLDIQ RDNFLKTISH VQEIVRSHPS DLLCADVIET VVKKEILKWD  540
SCLEDMDAKR IVIAFLEHAK KIKEIHNFNM KIRKEEFSEK LRDQFKWQLN ELESGYTNLE  600
LDYKKATSDS NIAVSTLEEL KKRLQLHTLL DEIKDMQQSL TTKEDEMQKL VHQVAEHESL  660
VQKSLMERVR VKTVLKNYEQ ILVGLKNRLA SAELGVIDVE ALVTVEMDNM SKEIEISKGS  720
LLHINFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48597.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232255.10.0B3 domain-containing protein Os03g0120900 isoform X1
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0Q3JB800.0A0A0Q3JB80_BRADI; Uncharacterized protein
STRINGBRADI2G48597.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Representative plantOGRP1435744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-11B3 family protein