PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48597.5.p
Common NameBRADI_2g48597, LOC100831234
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 677aa    MW: 77699.1 Da    PI: 6.9419
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48597.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-132593899
                      EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      l++++ ++W v+l  +k ++r+++t+GW++Fv++n L+e +f++F++d  ++ +++v+vf +
  Bradi2g48597.5.p  2 LKHSKWKTWPVEL--EKVDRRVFMTTGWSRFVEDNSLREYEFLLFRYD--MDLHFMVSVFGR 59
                      677888*******..*******************************96..566669999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.507160IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-14262IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-10259IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-14262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-10857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MLKHSKWKTW PVELEKVDRR VFMTTGWSRF VEDNSLREYE FLLFRYDMDL HFMVSVFGRN  60
ACEKAIRYSG SGAQATGNLE AKLRSDICPS NRRGHSADKL TEIANGLMHS HSLVKTPDQF  120
DTEGFADLHL HEVGGSKDEL RTCLLLKGPM EDDKAKTMTE VMRRLHLDKV TIELFCAILC  180
LYKWNVDAAA EDFDICRGKP QTQNQFLKKK LVLQFDFIKI QLRRFFPLED DCSTQICDSR  240
NSSLDEPNLL SEPLQCDQSA VKRKLVDDHV LCDLSCKQKR RIGKSRTQQT SETPRRSPRL  300
ARLNISHDSI ESLLKERPEV LESSPTSTID RVEDRAGQAR LLNKKPGSVL QGDCKNMIGS  360
FPQDCKRLKS ARGDMVPSEE PAHSEETFEE QINRNALETS ESLIRTGVME SSPPTNSKVS  420
APLKMNELYL TWKPSLHANP IEKILLDIQR DNFLKTISHV QEIVRSHPSD LLCADVIETV  480
VKKEILKWDS CLEDMDAKRI VIAFLEHAKK IKEIHNFNMK IRKEEFSEKL RDQFKWQLNE  540
LESGYTNLEL DYKKATSDSN IAVSTLEELK KRLQLHTLLD EIKDMQQSLT TKEDEMQKLV  600
HQVAEHESLV QKSLMERVRV KTVLKNYEQI LVGLKNRLAS AELGVIDVEA LVTVEMDNMS  660
KEIEISKGSL LHINFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48597.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232255.10.0B3 domain-containing protein Os03g0120900 isoform X1
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2K2DEQ80.0A0A2K2DEQ8_BRADI; Uncharacterized protein
STRINGBRADI2G48597.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-11B3 family protein