PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48690.1.p
Common NameBRADI_2g48690, LOC100833578
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22381.7 Da    PI: 8.5939
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.7e-22957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      krien ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  Bradi2g48690.1.p  9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHY 57
                      79*********************************************99 PP
2K-box27.99.5e-1173169298
             K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                       +++++++++    ++ + el+++ k  + L++e+R +  +d e+ ++  L  Le++Le +++k+Rs K++ +  ++++l ++ +  q e   L
  Bradi2g48690.1.p  73 EAATQTKVWCDIRQERRAELENVGKMCDLLEKELRFMTVDDGEQYTVPSLAALEHNLEAAMRKVRSEKDRKIGGEMSYLENMIRGKQAERYGL 165
                       5667778999999******************************************************************99999888888777 PP

             K-box  95 rkkl 98 
                         kl
  Bradi2g48690.1.p 166 CDKL 169
                       7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.357161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-27288IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-233859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1285169IPR002487Transcription factor, K-box
PROSITE profilePS5129710.03985175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYHYLAP  60
TVPSVKEFVE RYEAATQTKV WCDIRQERRA ELENVGKMCD LLEKELRFMT VDDGEQYTVP  120
SLAALEHNLE AAMRKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKEVEG  180
GSTSLNNGLD LKLGFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-14180184MEF2 CHIMERA
6byy_B2e-14180184MEF2 CHIMERA
6byy_C2e-14180184MEF2 CHIMERA
6byy_D2e-14180184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693140.0KF469314.1 Brachypodium distachyon MADS-box transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288316.11e-144MADS-box transcription factor 32-like
SwissprotQ8S1511e-126MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLI1HR491e-142I1HR49_BRADI; MADS-box transcription factor 19
STRINGBRADI2G48690.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Representative plantOGRP1435844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-22MIKC_MADS family protein
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  2. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  3. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]