PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g49906.1.p
Common NameBRADI_2g49906, LOC100837685
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 301aa    MW: 32539.8 Da    PI: 4.5148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g49906.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.4e-3086143359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+v+ +tY+ +Hnh+
  Bradi2g49906.1.p  86 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPTVLLVTYSFDHNHP 143
                       99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3079145IPR003657WRKY domain
SuperFamilySSF1182901.27E-2583145IPR003657WRKY domain
SMARTSM007748.0E-3584144IPR003657WRKY domain
PfamPF031066.8E-2686143IPR003657WRKY domain
PROSITE profilePS5081131.6486145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSGEDGYCST GTESPRADSV DEQAAADAES PTGGGGPNKR DHPSPSSPLP PPKRSRRSVE  60
KRVVSVPIAE CGDRARANGE GPPPPDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK  120
QVERSRTDPT VLLVTYSFDH NHPWPVPKSS CQPGKSSPRG LTAPKAEPDT PPVDCQPEPL  180
AEPETEPAEA TLEQEQDQEQ EQEQKPVVGL ADPAAITAAA AAEEEESIDY GWFDQYPTWH  240
RTQQYVPAAF DAAPLLPPEE WERELQGEDA LFAGLGELPE CAIVFGRRRE LALAATAPCS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-2061145679Disease resistance protein RRS1
5w3x_D8e-2061145679Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g49906.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3676431e-161AK367643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2059N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569817.10.0probable WRKY transcription factor 65
TrEMBLI1HRK80.0I1HRK8_BRADI; Uncharacterized protein
STRINGBRADI2G49906.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-38WRKY DNA-binding protein 65