PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g49906.2.p
Common NameBRADI_2g49906
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 251aa    MW: 27610.7 Da    PI: 4.5813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g49906.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-303693359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+v+ +tY+ +Hnh+
  Bradi2g49906.2.p 36 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPTVLLVTYSFDHNHP 93
                      99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-302995IPR003657WRKY domain
SuperFamilySSF1182908.89E-263295IPR003657WRKY domain
SMARTSM007748.0E-353494IPR003657WRKY domain
PfamPF031065.0E-263693IPR003657WRKY domain
PROSITE profilePS5081131.643695IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRDCSRRSVE KRVVSVPIAE CGDRARANGE GPPPPDSWAW RKYGQKPIKG SPYPRGYYRC  60
SSSKGCPARK QVERSRTDPT VLLVTYSFDH NHPWPVPKSS CQPGKSSPRG LTAPKAEPDT  120
PPVDCQPEPL AEPETEPAEA TLEQEQDQEQ EQEQKPVVGL ADPAAITAAA AAEEEESIDY  180
GWFDQYPTWH RTQQYVPAAF DAAPLLPPEE WERELQGEDA LFAGLGELPE CAIVFGRRRE  240
LALAATAPCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-201196680Disease resistance protein RRS1
5w3x_D3e-201196680Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g49906.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3676431e-126AK367643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2059N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569817.11e-178probable WRKY transcription factor 65
TrEMBLA0A0Q3JBY01e-180A0A0Q3JBY0_BRADI; Uncharacterized protein
STRINGBRADI2G49906.11e-177(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-39WRKY DNA-binding protein 65