PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g50220.1.p
Common NameBRADI_2g50220, LOC100844577
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 277aa    MW: 30561.7 Da    PI: 6.5118
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g50220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-11151199452
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                        kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  ++  l
  Bradi2g50220.1.p 151 PKRVKRILANRQSAQRSRVRKLQYISELERCVTTLQNEVSVLSPRVAFL 199
                       5999**********************************88887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-14148212IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.53150202IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.99E-11152204No hitNo description
PfamPF001702.9E-9152196IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-13152206No hitNo description
CDDcd147032.46E-25153204No hitNo description
PROSITE patternPS000360155170IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAQLPPKIPM PAHHHWPGGV ADAHHHHHQV AWADEFAEFA AARRGAHRRS LSDSVAFVEV  60
MAPGGAGDFD RLDDDQLMSM FPDEGHGGGG STTAPGSENG TSSDSDGVKH RKDHPQYDDD  120
EQQNDNEANP EEEPAPGRAT PTSSTETIRD PKRVKRILAN RQSAQRSRVR KLQYISELER  180
CVTTLQNEVS VLSPRVAFLD QQRTILTVGN SHLKQRIAAL AQDKIFKDAH QEALKEEIER  240
LRQVYQQQNL RMSSAPASDH AHGGPPPVRA EKELIS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g50220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085531e-91AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569840.10.0basic leucine zipper 6
SwissprotQ5JMK61e-114BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLI1HRQ00.0I1HRQ0_BRADI; Uncharacterized protein
STRINGBRADI2G50220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-63bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]