PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g51310.3.p

Common Name

BRADI_2g51310, LOC100837476

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 237aa MW: 25210.3 Da PI: 6.8545

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g51310.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.4	1.8e-36	44	149	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrr+Ca++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++ Bradi2g51310.3.p 44 PCGACKFLRRRCAPGCVFAPHFsggggRERGAAQFAAVHRVFGASNVAKLLSRVPVALRRDTARTVCYEAQARIADPVYGCVGTILALQHQVA 136 7*******************8887444559********************************************************* PP DUF260 89 qlkaelallkeel 101 l+ +l+ l+++l Bradi2g51310.3.p 137 LLQGQLSILQSQL 149 *****999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.932	43	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-40	44	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MQGAPDQPPC SKHAVTRTAG AAPGQQQQQR AEKEEASSAG PGAPCGACKF LRRRCAPGCV 60 FAPHFSGGGG RERGAAQFAA VHRVFGASNV AKLLSRVPVA LRRDTARTVC YEAQARIADP 120 VYGCVGTILA LQHQVALLQG QLSILQSQLF NYRLAFASTH PDADHFAALQ PAYSAGSAPS 180 QMVTYDDLPQ AVDFMDVEPQ MRGLESLQLS QPPHLEENES QDMSPFSDNV GQQPQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-35	37	152	4	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-35	37	152	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g51310.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567161.1	1e-172	LOB domain-containing protein 20
Refseq	XP_024315860.1	1e-172	LOB domain-containing protein 20
Refseq	XP_024315861.1	1e-172	LOB domain-containing protein 20
TrEMBL	I1HS39	1e-171	I1HS39_BRADI; Uncharacterized protein
STRING	BRADI2G51310.1	1e-171	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-38	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Bradi2g51310.3.p
Entrez Gene	100837476