PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g51990.3.p
Common NameBRADI_2g51990, LOC100822020
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 344aa    MW: 36344.2 Da    PI: 6.6728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g51990.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000282823191254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A eYIk L
  Bradi2g51990.3.p 282 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 319
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-8280340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-4280324No hitNo description
SuperFamilySSF474593.53E-10280331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADEWWSSST SQRSHGTSAC TAAPLMDTGH AAACGWTSPA AESTSSITFQ DPHRSSCATT  60
HQPSSDAASS LGDPHMDWTH AFLSGRSDAS FQAVLQDAMG PASTTSSRPL FRAHQSAADD  120
TVMNNNPFRN MSHGFSLLDQ APPAAAASSS PYGTAPALQQ GMFDAAAEAS NTSMFGECQS  180
TASYDAQAIQ LSTQMQGGGA QQLQYLSGGG GGYMPFGGGP LSSQLLLQAL QPKTSYSPNT  240
LMAKSAERAS SPAARKNEPD SPAAAKRPRI EAPSPLPTFK VRKEKLGDRI TALQQLVSPF  300
GKTDTASVLH EANEYIKFLH DQVASLTYPY LKNVNQMQQF QQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g51990.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-76HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567189.10.0transcription factor bHLH123
TrEMBLA0A2K2DFG30.0A0A2K2DFG3_BRADI; Uncharacterized protein
STRINGBRADI2G51990.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-33bHLH family protein