PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g52380.1.p
Common NameBRADI_2g52380, LOC100827269
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 175aa    MW: 18821.5 Da    PI: 10.5716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g52380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-192878256
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Bradi2g52380.1.p 28 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 78
                      7********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.64E-312787No hitNo description
Gene3DG3DSA:3.30.730.101.1E-312887IPR001471AP2/ERF domain
PROSITE profilePS5103221.9442885IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-222886IPR016177DNA-binding domain
PfamPF008471.0E-122877IPR001471AP2/ERF domain
SMARTSM003801.7E-352891IPR001471AP2/ERF domain
PRINTSPR003674.2E-102940IPR001471AP2/ERF domain
PRINTSPR003674.2E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDPMLRGVAS LGGGGGGGAM TGEGEEAHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT  60
PVEAALAYDR AARTLRGAKA KTNFPDHQLQ VPHRRLPPLQ QHQRTVPFGG IDLSFPSPWH  120
FVYFSPLAAP LPQAASTPAV SAPPSTTLQL GIMGSRPGSL PFDLNEPPSL LFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212885563ATERF1
3gcc_A2e-212885563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g52380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567200.21e-123ethylene-responsive transcription factor 12
TrEMBLA0A0Q3GGF11e-122A0A0Q3GGF1_BRADI; Uncharacterized protein
STRINGBRADI2G52380.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-33ERF domain protein 12