PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g52860.1.p
Common NameBRADI_2g52860, LOC100820986
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 477aa    MW: 52040.3 Da    PI: 6.6852
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g52860.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-10190231445
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k  rr+++NReAAr+sR+RKka+i++Le+   +L++  ++L
  Bradi2g52860.1.p 190 HKSLRRLAQNREAARKSRLRKKAYIQNLETSRLKLTQLEQEL 231
                       5788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-8180234No hitNo description
SMARTSM003388.1E-9187250IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128189233IPR004827Basic-leucine zipper domain
PfamPF001703.1E-7191231IPR004827Basic-leucine zipper domain
CDDcd147081.54E-22191243No hitNo description
SuperFamilySSF579595.06E-7191234No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF141443.1E-32273348IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MESRRGGGPA AAAAEDARGP MPGFGAPQHT IPTDVNIMQT SRVTDFGALA QSAGFRIEDL  60
ANLSANTLFN LKPNNHTFIS DPLQFGNYGK SISPTDLATT AAAAAAAAIT TVDPQALLQQ  120
KGVQSNIVAL RTRNSENWGE SSMADTSPRT DTSTDPDIDV DERNQMFEQG HLAAPTGSDS  180
SDKSRDQLDH KSLRRLAQNR EAARKSRLRK KAYIQNLETS RLKLTQLEQE LQRARQQGIF  240
ISSSGDQSHS TSGNGALAFD MEYARWLEEH NKHINELRAG VNAHAGDDDL RSIVDCIMAH  300
YDEFFRLKGV AAKADVFHVL SGMWKTPAER CFMWLGGFRS SELLKLLAGQ LEPLTEQQLA  360
GICNLQQSSQ QAEDALSQGM EALQQSLAET LASGSLGPAG SSSNVANYMG QMAMAMGKLG  420
TLENFLRQAD NLRLQTLQQM QRILTTRQSA RALLAISDYF SRLRALSSLW LARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g52860.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629930.0AK362993.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564436.10.0transcription factor HBP-1b(c1)
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLI1HSM80.0I1HSM8_BRADI; Uncharacterized protein
STRINGBRADI2G52860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-140TGACG motif-binding factor 6