PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53390.2.p
Common NameBRADI_2g53390
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 206aa    MW: 23123.7 Da    PI: 7.8308
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.6e-212585257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      r+R+t+t+ ql++Le+ F + n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  Bradi2g53390.2.p 25 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 85
                      89*****************99**************************************97 PP
2Wus_type_Homeobox103.81.1e-332487265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ar+RWtPt+ Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
   Bradi2g53390.2.p 24 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 87
                       789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-171990IPR009057Homeodomain-like
PROSITE profilePS5007114.8192186IPR001356Homeobox domain
SMARTSM003895.3E-142390IPR001356Homeobox domain
SuperFamilySSF466893.81E-182488IPR009057Homeodomain-like
CDDcd000862.54E-132587No hitNo description
PfamPF000462.4E-192585IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGGMRLGNMY CDPLMVHGGH KITARQRWTP TQMQLQILES IFDQGNGTPS KQKIKDITAE  60
LSQHGQISET NVYNWFQNRR ARSKRKQAAS LPNNAESEAE ADEESPTEKK PKSDGPLHQN  120
MATRAHNPER ISEMHRHLDM EHEQNRGMMY GSNSDNSSKS SGGLGQMSFY ANVMSNPRID  180
QFLGKVETPG SFSQFRPGES FDMYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564486.11e-154WUSCHEL-related homeobox 8
SwissprotQ5QMM31e-106WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0Q3KGU01e-153A0A0Q3KGU0_BRADI; Uncharacterized protein
TrEMBLA0A2K2DFQ61e-152A0A2K2DFQ6_BRADI; Uncharacterized protein
TrEMBLI1HSU61e-152I1HSU6_BRADI; Uncharacterized protein
STRINGBRADI2G53390.11e-153(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-38WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]