PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53500.2.p
Common NameBRADI_2g53500, LOC104583344
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 235aa    MW: 25975.5 Da    PI: 7.8618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.99.4e-09931391959
                       SS-EEEEEE-ST...T---EEEEEE-SS...STTEEEEEEES--SS- CS
              WRKY  19 efprsYYrCtsa...gCpvkkkversae...dpkvveitYegeHnhe 59 
                       +  r YY+C ++   gC++kk+v+++++      ++ itY +eH+++
  Bradi2g53500.2.p  93 KRIRYYYKCMYSherGCRAKKQVQQQDNssdHRPMFLITYVNEHTCQ 139
                       66799****9887799*******987641114569**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007748.5E-769140IPR003657WRKY domain
SuperFamilySSF1182906.8E-987140IPR003657WRKY domain
PfamPF031069.9E-1190139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-1190140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MALGKDAVEQ LRQELEGGYN LNASLLELLR RPLDWRGQKV AVEMIQGLSQ VLKVSLFMLN  60
PGDSSTAGEV RTAPCPKATT HGGTGKHTPA KDKRIRYYYK CMYSHERGCR AKKQVQQQDN  120
SSDHRPMFLI TYVNEHTCQQ LHPTENISTT NTTARNDHFD PPQHVGTSTE LENKIMAKCL  180
ANVVIGRAAA PSSWSSPASS MLPPPPVEEN MGEMMEIYSY FLCGPPFPPA SAWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314630.11e-158probable WRKY transcription factor 70
TrEMBLA0A0Q3N1A41e-177A0A0Q3N1A4_BRADI; Uncharacterized protein
STRINGBRADI2G53500.11e-157(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-07WRKY DNA-binding protein 54