PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53510.2.p
Common NameBRADI_2g53510, LOC104583345
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 323aa    MW: 34414.4 Da    PI: 6.1078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53510.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.33.6e-19113178259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.....SSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.....edpkvveitYegeHnhe 59 
                       +Dgy WrKYGqK + +++fpr YYrC+++   gCp++k+v+ ++     + pk+  ++Y  eH+++
  Bradi2g53510.2.p 113 SDGYMWRKYGQKRIMKTRFPRCYYRCSHHrerGCPATKQVQEQQhgdgaDHPKTYLVIYVHEHTCR 178
                       7***************************99999*******98862222246899999**9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-21104178IPR003657WRKY domain
PROSITE profilePS5081116.409107157IPR003657WRKY domain
SuperFamilySSF1182902.88E-19108179IPR003657WRKY domain
SMARTSM007746.2E-25112179IPR003657WRKY domain
PfamPF031064.2E-21114178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MQAQSRLMSS AASAADERYY EAVVRELRRG HELTAQLQAE AARALRGQGQ AEATAAFILR  60
EVSRAFTVCI SIMGGAAPAT PLAEAATAPA GAARRPRDDG APRKTIETSS PNSDGYMWRK  120
YGQKRIMKTR FPRCYYRCSH HRERGCPATK QVQEQQHGDG ADHPKTYLVI YVHEHTCRTT  180
PPPSAEPEAP VVARGRLARD DDAVPLDGGR GAKEELERQV LVSSLACVLQ GRHTDTTTWG  240
GAPAPGAGSS SSSQLGRVSA DDAGASASLN ALLATAMPPL TSSLGAGEEE EELDVMDYDV  300
PADTALCFGG PSYGMRDDDM LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-141141781069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53510.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753928.10.0WRKY transcription factor SUSIBA2
TrEMBLA0A0Q3GH300.0A0A0Q3GH30_BRADI; Uncharacterized protein
STRINGBRADI2G53510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Representative plantOGRP1438644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-17WRKY DNA-binding protein 55