PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53510.3.p
Common NameBRADI_2g53510
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 319aa    MW: 33828.7 Da    PI: 5.8816
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53510.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY42.31.5e-13113174259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.....SSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.....edpkvveitYegeHnhe 59 
                       +Dgy WrKYGqK + +++fpr    C+++   gCp++k+v+ ++     + pk+  ++Y  eH+++
  Bradi2g53510.3.p 113 SDGYMWRKYGQKRIMKTRFPR----CSHHrerGCPATKQVQEQQhgdgaDHPKTYLVIYVHEHTCR 174
                       7*******************7....8887777********98862222246899999**9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-16104174IPR003657WRKY domain
PROSITE profilePS5081111.003107153IPR003657WRKY domain
SuperFamilySSF1182904.18E-14108175IPR003657WRKY domain
SMARTSM007747.9E-19112175IPR003657WRKY domain
PfamPF031062.0E-15114174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MQAQSRLMSS AASAADERYY EAVVRELRRG HELTAQLQAE AARALRGQGQ AEATAAFILR  60
EVSRAFTVCI SIMGGAAPAT PLAEAATAPA GAARRPRDDG APRKTIETSS PNSDGYMWRK  120
YGQKRIMKTR FPRCSHHRER GCPATKQVQE QQHGDGADHP KTYLVIYVHE HTCRTTPPPS  180
AEPEAPVVAR GRLARDDDAV PLDGGRGAKE ELERQVLVSS LACVLQGRHT DTTTWGGAPA  240
PGAGSSSSSQ LGRVSADDAG ASASLNALLA TAMPPLTSSL GAGEEEEELD VMDYDVPADT  300
ALCFGGPSYG MRDDDMLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53510.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ0171495e-57HQ017149.1 Oryza sativa Indica Group voucher IRGC 69429 clone 1404 chromosome 1 region F genomic sequence.
GenBankHQ0171505e-57HQ017150.1 Oryza sativa Japonica Group voucher IRGC 69844 clone 1405 chromosome 1 region F genomic sequence.
GenBankHQ0171515e-57HQ017151.1 Oryza sativa Japonica Group voucher IRGC 69849 clone 1406 chromosome 1 region F genomic sequence.
GenBankHQ0171525e-57HQ017152.1 Oryza sativa Indica Group voucher IRGC 69853 clone 1407 chromosome 1 region F genomic sequence.
GenBankHQ0171535e-57HQ017153.1 Oryza sativa Indica Group voucher IRGC 69856 clone 1408 chromosome 1 region F genomic sequence.
GenBankHQ0171545e-57HQ017154.1 Oryza sativa Indica Group voucher IRGC 69865 clone 1409 chromosome 1 region F genomic sequence.
GenBankHQ0171555e-57HQ017155.1 Oryza sativa Japonica Group voucher IRGC 69869 clone 1410 chromosome 1 region F genomic sequence.
GenBankHQ0171565e-57HQ017156.1 Oryza sativa Japonica Group voucher IRGC 69873 clone 1411 chromosome 1 region F genomic sequence.
GenBankHQ0171575e-57HQ017157.1 Oryza sativa Japonica Group voucher IRGC 69878 clone 1412 chromosome 1 region F genomic sequence.
GenBankHQ0171585e-57HQ017158.1 Oryza sativa Indica Group voucher IRGC 69884 clone 1413 chromosome 1 region F genomic sequence.
GenBankHQ0171595e-57HQ017159.1 Oryza sativa Indica Group voucher IRGC 69887 clone 1414 chromosome 1 region F genomic sequence.
GenBankHQ0171605e-57HQ017160.1 Oryza sativa Indica Group voucher IRGC 69889 clone 1415 chromosome 1 region F genomic sequence.
GenBankHQ0171615e-57HQ017161.1 Oryza sativa Japonica Group voucher IRGC 69895 clone 1416 chromosome 1 region F genomic sequence.
GenBankHQ0171625e-57HQ017162.1 Oryza sativa Japonica Group voucher IRGC 69900 clone 1417 chromosome 1 region F genomic sequence.
GenBankHQ0171635e-57HQ017163.1 Oryza sativa Indica Group voucher IRGC 69902 clone 1418 chromosome 1 region F genomic sequence.
GenBankHQ0171645e-57HQ017164.1 Oryza sativa Indica Group voucher IRGC 69904 clone 1419 chromosome 1 region F genomic sequence.
GenBankHQ0171655e-57HQ017165.1 Oryza sativa Indica Group voucher IRGC 69906 clone 1420 chromosome 1 region F genomic sequence.
GenBankHQ0171665e-57HQ017166.1 Oryza sativa Indica Group voucher IRGC 69907 clone 1421 chromosome 1 region F genomic sequence.
GenBankHQ0171675e-57HQ017167.1 Oryza sativa Indica Group voucher IRGC 69913 clone 1422 chromosome 1 region F genomic sequence.
GenBankHQ0171685e-57HQ017168.1 Oryza sativa Indica Group voucher IRGC 69915 clone 1423 chromosome 1 region F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753928.10.0WRKY transcription factor SUSIBA2
TrEMBLA0A0Q3GGZ60.0A0A0Q3GGZ6_BRADI; Uncharacterized protein
STRINGBRADI2G53510.11e-141(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-13WRKY DNA-binding protein 55